SIBO (Small Intestinal Bacterial Overgrowth)
A digestive disorder characterized by excessive bacterial growth in the small intestine where bacteria levels should normally be low.
TL;DR
SIBO is excessive bacteria in the small intestine causing bloating, gas and altered stools. Treatment targets the bacteria and the underlying motility cause.
Overview
Small intestinal bacterial overgrowth occurs when colonic-type bacteria colonise the small intestine, where counts should be low. Fermenting carbohydrate proximally produces gas, distension and often diarrhoea or, in methane-predominant cases, constipation. It can also impair absorption: bacterial deconjugation of bile salts causes fat malabsorption, and bacterial consumption of B12 produces deficiency alongside paradoxically elevated folate. The critical clinical point is that SIBO is a consequence, not a primary disease. The small bowel is kept relatively sterile by gastric acid, pancreatic enzymes, bile, an intact ileocaecal valve and the migrating motor complex — the sweeping wave of motility that clears the small bowel between meals. Overgrowth follows when one of those fails: post-infectious IBS damaging motility, scleroderma, diabetic autonomic neuropathy, long-term proton pump inhibitor use, adhesions, diverticula or previous gastrointestinal surgery. Recurrence rates after treatment are high precisely because the underlying defect usually persists. Diagnosis is imperfect. Breath testing after glucose or lactulose is standard but has meaningful false positive and negative rates, especially with lactulose, and jejunal aspirate culture is invasive and rarely performed. Methane-predominant overgrowth, now more accurately termed intestinal methanogen overgrowth, involves archaea rather than bacteria and responds to different antibiotics.
Common Symptoms
- •Bloating and abdominal distension, often worsening through the day
- •Excessive gas
- •Diarrhoea, or constipation in methane-predominant cases
- •Abdominal pain or cramping
- •Fatigue and brain fog
- •Unintentional weight loss in severe cases
- •B12 deficiency with normal or high folate
Common Causes
- •Impaired migrating motor complex, often post-infectious
- •Long-term proton pump inhibitor use reducing gastric acid
- •Structural issues: adhesions, strictures, diverticula, blind loops
- •Previous gastrointestinal surgery or ileocaecal valve resection
- •Scleroderma and other connective tissue disease
- •Diabetic autonomic neuropathy
- •Chronic pancreatitis reducing enzymatic defence
Root Causes
{"Failure of the migrating motor complex to clear the small bowel between meals","Loss of the acid, bile and enzymatic barriers that normally limit colonisation","Anatomical stasis from adhesions, strictures or surgical blind loops"}
How It's Diagnosed
Diagnostic Markers
- Glucose or lactulose hydrogen breath test
- Methane on breath testing indicating methanogen overgrowth
- Jejunal aspirate culture, rarely performed
- Vitamin B12 with elevated folate
- Faecal elastase to exclude pancreatic insufficiency
- Coeliac serology
When to See a Doctor
Seek assessment for unintentional weight loss, blood in stool, persistent vomiting, iron deficiency anaemia, nocturnal symptoms or a family history of coeliac or inflammatory bowel disease. Symptoms attributed to SIBO overlap heavily with coeliac disease, pancreatic insufficiency and inflammatory bowel disease, all of which need excluding before repeated antibiotic courses.
Supplements Studied For This
Berberine
Berberine-containing herbal antimicrobial protocols achieved SIBO breath-test normalisation at rates comparable to rifaximin in open-label comparative work, making it a reasonable non-antibiotic option.
Digestive Enzymes
Digestive enzymes are not a treatment for small intestinal bacterial overgrowth and may not address the underlying motility problem.
L-Glutamine
No evidence supports glutamine as a SIBO treatment; it targets barrier function rather than bacterial overgrowth.
Diet & Lifestyle
Suggested Pattern
Short-term low-FODMAP or low-fermentation eating for symptom control, with structured reintroduction. Meal spacing matters as much as food choice, since the migrating motor complex only runs in the fasted state. Indefinite restriction reduces microbial diversity and is not the goal.
Eat more
- Well-cooked low-FODMAP vegetables such as carrots, courgette and spinach
- Lean proteins including eggs, fish and poultry
- Rice, oats and quinoa
- Firm bananas, blueberries and citrus
- Lactose-free or hard aged cheeses
Avoid
- Onion, garlic and leeks during the symptom-control phase
- Beans, lentils and chickpeas in large amounts
- Wheat-based bread and pasta in high volumes
- Sugar alcohols such as sorbitol, mannitol and xylitol
- High-lactose dairy
- Sweetened drinks and fruit juice
Supporting Research
Herbal Therapy Is Equivalent to Rifaximin for the Treatment of Small Intestinal Bacterial Overgrowth
Probiotics for Preventing and Treating Small Intestinal Bacterial Overgrowth: A Meta-Analysis and Systematic Review of Current Evidence
Comparative efficacy of diverse therapeutic regimens for small intestinal bacterial overgrowth: a systematic network meta-analysis
Herbal therapy is equivalent to rifaximin for the treatment of small intestinal bacterial overgrowth
Clinical trial: the combination of rifaximin with partially hydrolysed guar gum is more effective than rifaximin alone in eradicating small intestinal bacterial overgrowth
Frequently Asked Questions
Quick Facts
- •Affects 6-15% of population, up to 80% with IBS
- •Caused by bacterial overgrowth in small intestine
- •Main symptoms: bloating, gas, pain, diarrhea
- •Often causes nutrient malabsorption
- •Low stomach acid and slow motility are risk factors
- •Requires breath testing for diagnosis
Lifestyle Tips
- •Spacing meals four to five hours apart so the migrating motor complex can run
- •Avoiding constant snacking, which suppresses that clearing wave
- •A low-FODMAP approach for symptom control, used short term rather than indefinitely
- •Reviewing whether long-term proton pump inhibitor use is still needed
- •Managing stress, which affects gut motility directly
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This information is for educational purposes only. Always consult a healthcare professional before starting any supplement regimen.